Payroll Compliance Audit

# Payroll Compliance Auditor

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Install skill "Payroll Compliance Audit" with this command: npx skills add 1kalin/afrexai-payroll-audit

Payroll Compliance Auditor

Run a full payroll audit in under 10 minutes. Catches the errors that cost companies $845 per violation.

What It Does

  • Classifies workers (W-2 vs 1099) using the IRS 20-factor test
  • Audits overtime calculations against FLSA rules
  • Checks tax withholding accuracy (federal, state, local)
  • Flags misclassification risk with dollar-amount exposure estimates
  • Generates quarterly compliance checklists
  • Produces audit-ready reports for DOL or state agency reviews

How to Use

Tell your agent:

Full payroll audit: "Run a payroll compliance audit for [company]. We have [X] employees across [states]. Pay frequency is [weekly/biweekly/monthly]."

Worker classification check: "Check if these roles should be W-2 or 1099: [list roles with descriptions]."

Overtime audit: "Audit overtime compliance. Our employees work [schedule]. We're in [state]. Current OT policy: [describe]."

Tax withholding review: "Review tax withholding setup for employees in [states]. We use [payroll provider]."

Audit Framework

1. Worker Classification (IRS 20-Factor Test)

Score each worker across three categories:

  • Behavioral Control (6 factors): Instructions, training, integration, personal services, hiring assistants, work hours
  • Financial Control (5 factors): Business expenses, investment, profit/loss opportunity, market availability, method of payment
  • Relationship Type (4 factors): Written contracts, benefits, permanency, key services

Risk levels:

  • 0-4 factors toward employee → Low risk (likely contractor)
  • 5-9 factors → Medium risk (review needed)
  • 10+ factors → High risk (likely misclassified)

Penalty exposure per misclassified worker:

  • Back employment taxes: 15.3% of wages
  • FLSA overtime liability: up to 3 years back pay
  • Benefits liability: retirement, health, PTO
  • IRS penalties: $50-$260 per W-2 failure
  • State penalties vary: $5K-$25K per violation (CA, NY, MA highest)

2. Overtime Compliance (FLSA + State)

Check against federal AND state rules (state wins when more generous):

RuleFederal (FLSA)CaliforniaNew YorkWashington
OT threshold40 hrs/week8 hrs/day OR 40/week40 hrs/week40 hrs/week
OT rate1.5x1.5x (2x after 12 hrs/day)1.5x1.5x
Salary exemption$58,656/yr (2026)$66,560/yr$62,400/yr (NYC)$67,724.80/yr
7th day ruleNone1.5x first 8 hrs, 2x afterNoneNone

Common violations:

  • Averaging hours across two weeks (illegal under FLSA)
  • Not paying OT on bonuses/commissions
  • Misclassifying non-exempt as exempt
  • Rounding errors exceeding 7-minute threshold
  • Auto-deducting meal breaks not actually taken

3. Tax Withholding Accuracy

Verify against current tables:

Federal:

  • 2026 FICA: 6.2% SS (wage base $174,900) + 1.45% Medicare
  • Additional Medicare: 0.9% above $200K single / $250K married
  • FUTA: 6.0% first $7,000 (5.4% credit = 0.6% effective)

State cross-checks:

  • SUI rates (experience-rated — verify annual notice)
  • SDI/PFL (CA, NJ, NY, WA, MA, CT, OR, CO, MD)
  • Local taxes (NYC, Philadelphia, San Francisco, etc.)
  • Reciprocity agreements (employees in different state than work)

4. Quarterly Compliance Checklist

Monthly:

  • Reconcile payroll register to GL
  • Verify new hire reporting (within 20 days)
  • Check garnishment calculations
  • Review PTO accrual accuracy

Quarterly:

  • File Form 941 (federal) by last day of following month
  • File state unemployment reports
  • Reconcile YTD withholdings to pay stubs
  • Review contractor payments approaching $600 threshold
  • Audit benefit deductions against enrollment

Annual:

  • W-2 distribution by January 31
  • 1099-NEC filing by January 31
  • ACA reporting (1095-C) by March 2
  • Update salary exemption thresholds
  • Review state minimum wage changes
  • Workers' comp audit preparation

5. Audit Report Format

PAYROLL COMPLIANCE AUDIT REPORT
Company: [Name]
Period: [Q1/Q2/Q3/Q4 YYYY]
Employees: [Count]
States: [List]
Audit Date: [Date]

EXECUTIVE SUMMARY
Overall Risk Score: [Low/Medium/High/Critical]
Issues Found: [Count]
Estimated Exposure: $[Amount]

FINDINGS
[F-001] [Category] - [Severity]
Description: [What's wrong]
Exposure: $[Amount]
Remediation: [Fix]
Deadline: [Date]

RECOMMENDATIONS
1. [Priority action]
2. [Secondary action]
3. [Long-term improvement]

Cost of Getting It Wrong

ViolationAverage Penalty
Misclassification (per worker)$12,000-$25,000
FLSA overtime (per employee)$1,000-$10,000 + back pay
Late W-2/1099 filing$50-$580 per form
Failure to deposit taxes2%-15% of deposit
Willful failure$100K+ fine + criminal

The DOL recovered $274M in back wages in 2024. Average investigation finds $1,150 per employee owed.

Who This Is For

  • HR teams without dedicated payroll compliance staff
  • Growing companies expanding to new states
  • Businesses using contractors heavily (tech, construction, healthcare)
  • Anyone who just got a DOL audit letter

Built by AfrexAI — AI context packs for business operations. Full compliance automation: $47 Professional Services Pack.

Calculate what payroll errors are costing you: AI Revenue Calculator

Set up your own compliance agent in 5 minutes: Agent Setup Wizard

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